diff --git a/server/middlewares/integration/verifyApiKeyApiKeyAccess.ts b/server/middlewares/integration/verifyApiKeyApiKeyAccess.ts
index 1441589d..ad5b7fc4 100644
--- a/server/middlewares/integration/verifyApiKeyApiKeyAccess.ts
+++ b/server/middlewares/integration/verifyApiKeyApiKeyAccess.ts
@@ -35,6 +35,11 @@ export async function verifyApiKeyApiKeyAccess(
             );
         }
 
+        if (callerApiKey.isRoot) {
+            // Root keys can access any key in any org
+            return next();
+        }
+
         const [callerApiKeyOrg] = await db
             .select()
             .from(apiKeyOrg)
diff --git a/server/middlewares/integration/verifyApiKeyClientAccess.ts b/server/middlewares/integration/verifyApiKeyClientAccess.ts
index 3583ef4d..e5ed624d 100644
--- a/server/middlewares/integration/verifyApiKeyClientAccess.ts
+++ b/server/middlewares/integration/verifyApiKeyClientAccess.ts
@@ -28,6 +28,11 @@ export async function verifyApiKeyClientAccess(
             );
         }
 
+        if (apiKey.isRoot) {
+            // Root keys can access any key in any org
+            return next();
+        }
+
         const client = await db
             .select()
             .from(clients)
diff --git a/server/middlewares/integration/verifyApiKeyOrgAccess.ts b/server/middlewares/integration/verifyApiKeyOrgAccess.ts
index 84ba7fe9..c705dc0f 100644
--- a/server/middlewares/integration/verifyApiKeyOrgAccess.ts
+++ b/server/middlewares/integration/verifyApiKeyOrgAccess.ts
@@ -27,6 +27,11 @@ export async function verifyApiKeyOrgAccess(
             );
         }
 
+        if (req.apiKey?.isRoot) {
+            // Root keys can access any key in any org
+            return next();
+        }
+
         if (!req.apiKeyOrg) {
             const apiKeyOrgRes = await db
                 .select()
diff --git a/server/middlewares/integration/verifyApiKeyResourceAccess.ts b/server/middlewares/integration/verifyApiKeyResourceAccess.ts
index 2473c814..184ee73c 100644
--- a/server/middlewares/integration/verifyApiKeyResourceAccess.ts
+++ b/server/middlewares/integration/verifyApiKeyResourceAccess.ts
@@ -37,6 +37,11 @@ export async function verifyApiKeyResourceAccess(
             );
         }
 
+        if (apiKey.isRoot) {
+            // Root keys can access any key in any org
+            return next();
+        }
+
         if (!resource.orgId) {
             return next(
                 createHttpError(
diff --git a/server/middlewares/integration/verifyApiKeyRoleAccess.ts b/server/middlewares/integration/verifyApiKeyRoleAccess.ts
index 0df10913..ffe223a6 100644
--- a/server/middlewares/integration/verifyApiKeyRoleAccess.ts
+++ b/server/middlewares/integration/verifyApiKeyRoleAccess.ts
@@ -45,6 +45,11 @@ export async function verifyApiKeyRoleAccess(
             );
         }
 
+        if (apiKey.isRoot) {
+            // Root keys can access any key in any org
+            return next();
+        }
+
         const orgIds = new Set(rolesData.map((role) => role.orgId));
 
         for (const role of rolesData) {
diff --git a/server/middlewares/integration/verifyApiKeySetResourceUsers.ts b/server/middlewares/integration/verifyApiKeySetResourceUsers.ts
index cbb2b598..9c96e6ec 100644
--- a/server/middlewares/integration/verifyApiKeySetResourceUsers.ts
+++ b/server/middlewares/integration/verifyApiKeySetResourceUsers.ts
@@ -32,6 +32,11 @@ export async function verifyApiKeySetResourceUsers(
         return next(createHttpError(HttpCode.BAD_REQUEST, "Invalid user IDs"));
     }
 
+    if (apiKey.isRoot) {
+        // Root keys can access any key in any org
+        return next();
+    }
+
     if (userIds.length === 0) {
         return next();
     }
diff --git a/server/middlewares/integration/verifyApiKeySiteAccess.ts b/server/middlewares/integration/verifyApiKeySiteAccess.ts
index 35ec3b6a..0a310d15 100644
--- a/server/middlewares/integration/verifyApiKeySiteAccess.ts
+++ b/server/middlewares/integration/verifyApiKeySiteAccess.ts
@@ -1,9 +1,6 @@
 import { Request, Response, NextFunction } from "express";
 import { db } from "@server/db";
-import {
-    sites,
-    apiKeyOrg
-} from "@server/db";
+import { sites, apiKeyOrg } from "@server/db";
 import { and, eq, or } from "drizzle-orm";
 import createHttpError from "http-errors";
 import HttpCode from "@server/types/HttpCode";
@@ -31,6 +28,11 @@ export async function verifyApiKeySiteAccess(
             );
         }
 
+        if (apiKey.isRoot) {
+            // Root keys can access any key in any org
+            return next();
+        }
+
         const site = await db
             .select()
             .from(sites)
diff --git a/server/middlewares/integration/verifyApiKeyTargetAccess.ts b/server/middlewares/integration/verifyApiKeyTargetAccess.ts
index f810e4a2..71146c15 100644
--- a/server/middlewares/integration/verifyApiKeyTargetAccess.ts
+++ b/server/middlewares/integration/verifyApiKeyTargetAccess.ts
@@ -66,6 +66,11 @@ export async function verifyApiKeyTargetAccess(
             );
         }
 
+        if (apiKey.isRoot) {
+            // Root keys can access any key in any org
+            return next();
+        }
+
         if (!resource.orgId) {
             return next(
                 createHttpError(
diff --git a/server/middlewares/integration/verifyApiKeyUserAccess.ts b/server/middlewares/integration/verifyApiKeyUserAccess.ts
index 070ae5ac..a69489bf 100644
--- a/server/middlewares/integration/verifyApiKeyUserAccess.ts
+++ b/server/middlewares/integration/verifyApiKeyUserAccess.ts
@@ -27,6 +27,11 @@ export async function verifyApiKeyUserAccess(
             );
         }
 
+        if (apiKey.isRoot) {
+            // Root keys can access any key in any org
+            return next();
+        }
+
         if (!req.apiKeyOrg || !req.apiKeyOrg.orgId) {
             return next(
                 createHttpError(
diff --git a/server/routers/apiKeys/createRootApiKey.ts b/server/routers/apiKeys/createRootApiKey.ts
index 095d952b..0754574a 100644
--- a/server/routers/apiKeys/createRootApiKey.ts
+++ b/server/routers/apiKeys/createRootApiKey.ts
@@ -63,15 +63,6 @@ export async function createRootApiKey(
             lastChars,
             isRoot: true
         });
-
-        const allOrgs = await trx.select().from(orgs);
-
-        for (const org of allOrgs) {
-            await trx.insert(apiKeyOrg).values({
-                apiKeyId,
-                orgId: org.orgId
-            });
-        }
     });
 
     try {
diff --git a/server/routers/org/createOrg.ts b/server/routers/org/createOrg.ts
index 8adc2ecb..d26774dd 100644
--- a/server/routers/org/createOrg.ts
+++ b/server/routers/org/createOrg.ts
@@ -215,7 +215,7 @@ export async function createOrg(
                     orgId: newOrg[0].orgId,
                     roleId: roleId,
                     isOwner: true
-                }); 
+                });
             }
 
             const memberRole = await trx
@@ -234,18 +234,6 @@ export async function createOrg(
                     orgId
                 }))
             );
-
-            const rootApiKeys = await trx
-                .select()
-                .from(apiKeys)
-                .where(eq(apiKeys.isRoot, true));
-
-            for (const apiKey of rootApiKeys) {
-                await trx.insert(apiKeyOrg).values({
-                    apiKeyId: apiKey.apiKeyId,
-                    orgId: newOrg[0].orgId
-                });
-            }
         });
 
         if (!org) {